{"public_papers": [{"id": "41571642", "title": "Meta-unstable mRNAs in activated CD8(+) T cells are defined by interlinked AU-rich elements and m(6)A mRNA methylation.", "year": 2026, "journal": "Nat Commun"}, {"id": "40140581", "title": "irCLIP-RNP and Re-CLIP reveal patterns of dynamic protein assemblies on RNA.", "year": 2025, "journal": "Nature"}, {"id": "40993389", "title": "Collective homeostasis of condensation-prone proteins via their mRNAs.", "year": 2025, "journal": "Nature"}, {"id": "40390134", "title": "hiPSC-neurons recapitulate the subtype-specific cell intrinsic nature of susceptibility to neurodegenerative disease-relevant aggregation.", "year": 2025, "journal": "Acta Neuropathol Commun"}], "pipeline_count": 23, "user_count": 492, "sample_count": 9318, "execution_count": 4218, "sample_counts": {"types": {"CLIP": 1344, "ChIP-Seq": 3, "scRNA-Seq": 0, "RNA-Seq": 393, "Ribo-Seq": 4, "Hi-C": 1}, "organisms": {"Human": 1552, "Mouse": 176, "Rat": 17, "Zebrafish": 0, "Drosophila": 0, "Yeast": 0, "E. Coli": 0, "Chicken": 0, "Arabidopsis": 0, "V. Fischeri": 0}}, "news": [{"headline": "You can now use Jupyter notebooks to analyse data.", "date": "2025-07-24", "category": 2}, {"headline": "The scdownstream pipeline is now available.", "date": "2025-07-19", "category": 1}, {"headline": "The default Nextflow version is now 24.04.2.", "date": "2025-07-18", "category": 3}, {"headline": "The Ribo-Seq pipeline is now available.", "date": "2025-07-14", "category": 1}, {"headline": "More filter terms added to advanced search.", "date": "2025-03-03", "category": 2}]}